Vibin Ramakrishnan: search on Z-Library

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1

Peptide based Antimicrobials: Design Strategies and Therapeutic Potential

Hazam, Prakash Kishore, Goyal, Ruchika, Ramakrishnan, Vibin

Journal:

Progress in Biophysics and Molecular Biology

Year:

2018

Language:

english

File:

PDF, 2.21 MB

english, 2018

2

Modulation of Peptide Based Nano-Assemblies with Electric and Magnetic Fields

Pandey, Gaurav, Saikia, Jahnu, Sasidharan, Sajitha, Joshi, Deep C., Thota, Subhash, Nemade, Harshal B., Chaudhary, Nitin, Ramakrishnan, Vibin

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.08 MB

english, 2017

3

Simulated folding in polypeptides of diversified molecular tacticity: Implications for protein folding and de novo design

Vibin Ramakrishnan, Ranjit Ranbhor, Susheel Durani

Journal:

Year:

2005

Language:

english

File:

PDF, 393 KB

english, 2005

4

Structure-based barcoding of proteins

Metri, Rahul, Jerath, Gaurav, Kailas, Govind, Gacche, Nitin, Pal, Adityabarna, Ramakrishnan, Vibin

Journal:

Protein Science

Year:

2014

Language:

english

File:

PDF, 313 KB

english, 2014

5

Automated protein design: Landmarks and operational principles

Kumar, Anil, Ranbhor, Ranjit, Patel, Kirti, Ramakrishnan, Vibin, Durani, Susheel

Journal:

Progress in Biophysics and Molecular Biology

Year:

2017

Language:

english

File:

PDF, 1.14 MB

english, 2017

6

Geofold: Topology-based protein unfolding pathways capture the effects of engineered disulfides on kinetic stability

Vibin Ramakrishnan, Sai Praveen Srinivasan, Saeed M. Salem, Suzanne J. Matthews, Wilfredo Colón, Mohammed Zaki, Christopher Bystroff

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.72 MB

english, 2012

7

Homochiral Stereochemistry: The Missing Link of Structure to Energetics in Protein Folding

Kumar, Anil, Ramakrishnan, Vibin, Ranbhor, Ranjit, Patel, Kirti, Durani, Susheel

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 1.94 MB

english, 2009

8

The Link between Sequence and Conformation in Protein Structures Appears To Be Stereochemically Established

Ramakrishnan, Vibin, Ranbhor, Ranjit, Kumar, Anil, Durani, Susheel

Journal:

Journal of Physical Chemistry B

Year:

2006

Language:

english

File:

PDF, 604 KB

english, 2006

9

The interplay of sequence and stereochemistry in defining conformation in proteins and polypeptides

Ranjit Ranbhor, Vibin Ramakrishnan, Anil Kumar, Susheel Durani

Journal:

Year:

2006

Language:

english

File:

PDF, 532 KB

english, 2006

10

Bactericidal Potency and Extended Serum Life of Stereo-Chemically Engineered Peptides Against Mycobacterium

Hazam, Prakash Kishore, Singh, Anjali, Chaudhary, Nitin, Ramakrishnan, Vibin

Journal:

International Journal of Peptide Research and Therapeutics

Year:

2018

Language:

english

File:

PDF, 1.67 MB

english, 2018

11

Electric Field Mediated Disruption of Beta Amyloid; a Potential Non-Invasive Therapy for Alzheimer's Disease

Saikia, Jahnu, Ramakrishnan, Vibin

Journal:

Biophysical Journal

Year:

2019

File:

PDF, 63 KB

2019

12

Danazol has potential to cause PKC translocation, cell cycle dysregulation, and apoptosis in breast cancer cells

Deka, Suman Jyoti, Roy, Ashalata, Ramakrishnan, Vibin, Manna, Debasis, Trivedi, Vishal

Journal:

Chemical Biology & Drug Design

Year:

2017

Language:

english

File:

PDF, 1.16 MB

english, 2017

13

Virtual Activity Profiling of Bioactive Molecules by 1D Fingerprinting

Aimy Sebastian, Andreas Bender, Vibin Ramakrishnan

Journal:

Molecular Informatics

Year:

2010

Language:

english

File:

PDF, 553 KB

english, 2010

14

Existence of Specific “Folds” in Polyproline II Ensembles of an “Unfolded” Alanine Peptide Detected by Molecular Dynamics

Ramakrishnan, Vibin, Ranbhor, Ranjit, Durani, Susheel

Journal:

Journal of the American Chemical Society

Year:

2004

Language:

english

File:

PDF, 55 KB

english, 2004

15

Single Crystal Organic Nanoflowers

Sasidharan, Sajitha, P. C., Shyni, Chaudhary, Nitin, Ramakrishnan, Vibin

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.87 MB

english, 2017

16

Insight into structural and biochemical determinants of substrate specificity of PFI1625c: Correlation analysis of protein-peptide molecular models

Lhouvum, Kimjolly, Ramakrishnan, Vibin, Trivedi, Vishal

Journal:

Journal of Molecular Graphics and Modelling

Year:

2013

Language:

english

File:

PDF, 4.20 MB

english, 2013

17

Effect of tacticity-derived topological constraints in bactericidal peptides

Hazam, Prakash Kishore, Jerath, Gaurav, Kumar, Anil, Chaudhary, Nitin, Ramakrishnan, Vibin

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2017

Language:

english

File:

PDF, 951 KB

english, 2017

18

Peptido-mimetic Approach in the Design of Syndiotactic Antimicrobial Peptides

Hazam, Prakash Kishore, Jerath, Gaurav, Chaudhary, Nitin, Ramakrishnan, Vibin

Journal:

International Journal of Peptide Research and Therapeutics

Year:

2017

Language:

english

File:

PDF, 1.60 MB

english, 2017

19

Mapping of phosphatidylserine recognition region on CD36 ectodomain

Banesh, Sooram, Ramakrishnan, Vibin, Trivedi, Vishal

Journal:

Archives of Biochemistry and Biophysics

Year:

2018

Language:

english

File:

PDF, 4.08 MB

english, 2018

20

Electric Field Mediated Disruption of Beta Amyloid; a Potential Non-Invasive Therapy for Alzheimer's Disease

Saikia, Jahnu, Ramakrishnan, Vibin

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 63 KB

english, 2019

21

Electric Field Disrupts Amyloid Aggregation; Potential Non-invasive Therapy for Alzheimer’s Disease

Saikia, Jahnu, Pandey, Gaurav, Sashidharan, Sajitha, Antony, Ferrin, Nemade, Harshal B., Kumar, Sachin, Chaudhary, Nitin, Ramakrishnan, Vibin

Journal:

ACS Chemical Neuroscience

Year:

2019

Language:

english

File:

PDF, 896 KB

english, 2019

22

IDeAS: Automated Design Tool for Hetero-chiral Protein Folds

Ranbhor, Ranjit, Kumar, Anil, Tendulkar, Abhijit, Patel, Kirti, Ramakrishnan, Vibin, Durani, Susheel

Journal:

Physical Biology

Year:

2018

Language:

english

File:

PDF, 818 KB

english, 2018

23

Modulating AÎ² Fibrillogenesis with âTrojanâ peptides

Pandey, Gaurav, Morla, Sudhir, Kumar, Sachin, Ramakrishnan, Vibin

Journal:

Year:

2020

File:

PDF, 2.03 MB

2020

24

Modulation of tau protein aggregation using âTrojanâ sequences

Pandey, Gaurav, Morla, Sudhir, Kumar, Sachin, Ramakrishnan, Vibin

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

2020

File:

PDF, 2.36 MB

2020

25

Symmetry-Directed Self-Organization in Peptide Nanoassemblies through Aromatic π–π Interactions

Sasidharan, Sajitha, Hazam, Prakash Kishore, Ramakrishnan, Vibin

Journal:

Journal of Physical Chemistry B

Year:

2017

Language:

english

File:

PDF, 1.26 MB

english, 2017

26

Highly potent antimicrobial peptides from N-terminal membrane-binding region of E. coli MreB

Saikia, Karabi, Sravani, Yalavarthi Durga, Ramakrishnan, Vibin, Chaudhary, Nitin

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.04 MB

english, 2017

27

Automated design evolution of stereochemically randomized protein foldamers

Ranbhor, Ranjit, Kumar, Anil, Patel, Kirti, Ramakrishnan, Vibin, Durani, Susheel

Journal:

Physical Biology

Year:

2018

Language:

english

File:

PDF, 2.26 MB

english, 2018

28

Syndiotactic Peptides for Targeted Delivery

Jerath, Gaurav, Goyal, Ruchika, Trivedi, Vishal, Santhoshkumar, T.R., Ramakrishnan, Vibin

Journal:

Acta Biomaterialia

Year:

2019

Language:

english

File:

PDF, 3.12 MB

english, 2019

29

Modulation of aggregation with an electric field; scientific roadmap for a potential non-invasive therapy against tauopathies

Pandey, Gaurav, Morla, Sudhir, Nemade, Harshal B., Kumar, Sachin, Ramakrishnan, Vibin

Journal:

Year:

2019

File:

PDF, 1.02 MB

2019

30

Characterization of ICAM-1 biophore to design cytoadherence blocking peptides

Mehra, A., Jerath, Gaurav, Ramakrishnan, Vibin, Trivedi, Vishal

Journal:

Journal of Molecular Graphics and Modelling

Year:

2015

Language:

english

File:

PDF, 2.31 MB

english, 2015

31

Creating novel protein scripts beyond natural alphabets

Anil Kumar, Vibin Ramakrishnan

Journal:

Systems and Synthetic Biology

Year:

2010

Language:

english

File:

PDF, 486 KB

english, 2010

32

Conformationally constrained peptides for drug delivery

Jerath, Gaurav, Goyal, Ruchika, Trivedi, Vishal, Santhoshkumar, Thankayyan R., Ramakrishnan, Vibin

Journal:

Journal of Peptide Science

Year:

2020

Language:

english

File:

PDF, 5.14 MB

english, 2020

33

bPE toolkit: toolkit for computational protein engineering

Jerath, Gaurav, Hazam, Prakash Kishore, Ramakrishnan, Vibin

Journal:

Systems and Synthetic Biology

Year:

2014

Language:

english

File:

PDF, 305 KB

english, 2014

34

Peptide-Based Delivery Vectors with Pre-defined Geometrical Locks

Goyal, Ruchika, Jerath, Gaurav, Chandrasekharan, Aneesh, Thankayyan Retnabai, Santhoshkumar, Ramakrishnan, Vibin

Journal:

RSC Medicinal Chemistry

Year:

2020

File:

PDF, 2.41 MB

2020

35

Invasive and non-invasive therapies for Alzheimerâs disease and other amyloidosis

Pandey, Gaurav, Ramakrishnan, Vibin

Journal:

Biophysical Reviews

Year:

2020

File:

PDF, 1.26 MB

2020

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